Archive for the 'Information Theory' Category

Mar 20 2012

Fruity Loops and Arrowheads

One of the features of any network is the appearance of motifs, patterns (sub-graphs) that recur within a network much more often than expected at random. These small circuits can be considered as simple building blocks from which the network is composed. This analogy is quite useful, since many of these motifs would appear to […]

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Dec 18 2011


A quodlibet is a piece of music combining several different melodies, usually popular tunes, in counterpoint and often a light-hearted, humorous manner. The term is Latin, meaning “whatever” or literally, “what pleases.” Quodlibet (QUOD) is a suite of network creation, editing and querying software I am currenty developing. QUOD is a software application that displays […]

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Nov 12 2011

Beautiful Data

It has been said that if one really wants to learn something, they should teach it. However we may want to expand that aphorism, to perhaps if one really wants to learn something, they should teach it, organize it or animate it. The commonality between science and art is in trying to see profoundly – […]

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Oct 29 2011

The Recipe Inside The Recipe

A n insignificant percentage of the total amount of DNA is devoted actual gene function. The most common protein recipe in the human genome is not even for a human protein, but rather an enzyme commonly used by viruses to copy them called reverse transcriptase, an essential part of the toolbox used by the AIDS […]

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